Beta12 actually broke the SPI transfers I'm doing in the RFM12B driver. Something changed here. My code has the same issue with release 1.12. Beta10 works.
This is how I do SPI:
SPI0_CTAR0 = 0xF8010000; // 16bit transfers @16MHz
digitalWriteFast(10, LOW);
SPI0_PUSHR = (1<<26) |...