I'm gonna go out on a limb here and say I don't think anyone is offended, per se. I think there are two factors at work here:
- PJRC and friends do not want to encourage mischief and they're willing to err on the side of discouraging projects that have the slightest potential for mischief about them. The focus is on creating useful or artistic things that are generally harmless.
- PJRC like any company lives or dies based on its reputation. If PJRC got a reputation--no matter how undeserved--for promoting unlawful or anti-social behavior, the business could suffer.
I believe there is a huge societal good that comes from computer security research and everyone who gets into the field starts somewhere. I'd go further to say that the degree of ignorance about computer security among programmers approaches gross negligence in many cases. Software developers create products that shift risk to consumers without the consumers realizing it. If a car manufacturer ignored safety considerations, consumers would be rightly outraged, yet when we hear about the latest computer exploit, somehow it doesn't seem nearly as terrible.
So, I'd like to encourage you to learn what you can about the vulnerabilities of the USB stack and put that knowledge to good use teaching other people about the risks and ways of mitigating the risks.
Now, to your question. The Teensy boards before the 3.0 use 8-bit AVR processors. The Teensy 3.0 and later use 32-bit ARM Cortex-M4 processors. They have different instruction sets and different hardware capabilities like timers, interrupts, analog-to-digital converters, etc. The specialized hardware capabilities are configured and used by writing and reading to dedicated memory locations. In many cases, these differences can be fully abstracted by compilers and libraries. In some cases, an example program or library you might want to try will be written with processor-specific assumptions.
For most things, the Teensy 3.x models are simply better than the Teensy 2.x models. Exceptions would be due to compatibility, 5 volt operation, number of I/O pins and maybe a few more esoteric things.